Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs145818132 chr7:105164166 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs145907017 chr2:176163676 C/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs146011609 chr7:76711321 T/A 0.000314 172 25.67 24.53 14.57 KM Plot
PCPG rs1460219 chr2:107252360 T/C 0.000212 178 26.57 21.95 25.87 KM Plot
PCPG rs146085815 chr7:105162562 G/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs146115656 chr2:118537460 C/T 1.64E-5 177 24.7 30.63 11.65 KM Plot
PCPG rs146130240 chr7:105156948 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs146134541 chr16:89851116 TGGGGAAGGGGAA/T 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs146147416 chr10:29825948 T/C 8.92E-11 170 25.6 25.87 10.3 KM Plot
PCPG rs146281019 chr9:136941188 C/G 1.85E-5 178 25.53 21.55 28.57 KM Plot
PCPG rs146338188 chr10:69822884 ATT/A 0 170 25.77 21.45 2.28 KM Plot
PCPG rs146415319 chr16:88654953 ATCCTGTCTC/A 0.000372 175 25.47 24.35 14.47 KM Plot
PCPG rs146569219 chr16:89916879 C/CGAG 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs146635619 chr2:118683095 C/T 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs146760328 chr13:114179230 TTTTA/T 4.67E-12 177 24.17 30.33 3.32 KM Plot